Simulation-based inference (SBI) for parameter estimation is vulnerable to model misspecification: neural summaries and density estimators trained on a specific forward model typically fail when applied to data drawn from another model, or from real observations, and no training simulator can capture the full observational pipeline of a real measurement exactly. We show that a self-supervised Vision Transformer (ViT), pretrained label-free on a fast approximate simulator, produces transferable data summaries that generalize across simulators. Without retraining, it can be reused as a frozen encoder to infer astrophysical parameters from a completely different simulator that resolves the radiative transfer explicitly, on which it has never seen either data or parameters. As a concrete use case in 21cm cosmology, SKATR, a ViT pretrained with a Joint Embedding Predictive Architecture (JEPA), serves as a foundation model for reionization inference from upcoming SKA measurements: SKATR is pretrained once on 67k low-cost, noiseless semi-numerical 21cmFAST lightcones, then frozen and applied to hydrodynamical Loreli II lightcones, where a lightweight conditional flow matching head infers five astrophysical parameters; the encoder is never shown Loreli data, its parameters, or any noise. In our comparison, SKATR yields the most precise and best-calibrated posteriors across all five parameters, matching the accuracy of the fully-supervised in-domain baseline while requiring 2.6x fewer radiative-transfer simulations. Under realistic SKA AA* noise, only SKATR remains simultaneously accurate, informative, and calibrated, outperforming even a supervised baseline retrained from scratch on noisy data. Self-supervised pretraining on computationally efficient semi-numerical simulations is therefore a viable route to calibrated, simulator- and noise-agnostic reionization inference for the SKA-era.
We present a first application of sparse-autoencoder-based mechanistic interpretability to particle physics. Studying a neutrino foundation model pretrained on IceCube data and fine-tuned for direction reconstruction, we identify a validated atlas of physical concepts in the model representation, using a strict validation protocol consisting of held-out tests, matched nuisance controls, and replication across independent dictionary trainings. Causal interventions show that the direction head barely draws on this atlas. Motivated by this underused information, we train an uncertainty head on the same event-level representation to predict the model's angular reconstruction error. Unlike the direction head, it depends causally on quality and brightness features from the atlas. At $20\%$ selection efficiency, this interpretable estimator improves the median angular resolution from $20.2^\circ$ to $3.2^\circ$. These results suggest that mechanistic interpretability can reveal learned latent physics encoded within a model's internal representation and help design downstream tasks that exploit it.